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Amir Alexander Abdelbaki 9107b9961a fix(installer): root-owned ~/.config, wrong logging path, flatpak system scope 
Diagnosed from a full guided-install log plus a Hyprland startup log. Three
distinct remaining failures:

1. ~/.config left root-owned. The FIDO/Yubico setup runs `mkdir -p
   ~/.config/Yubico` as root (creating ~/.config itself), then chowned only
   Yubico/. ~/.config stayed root-owned, so every later user step failed with
   EACCES: shell-setup symlinks (starship.toml), the mail/caldav systemd --user
   timers, and Hyprland creating ~/.config/hypr at startup. Chown the whole
   ~/.config in both Yubico spots, and defensively reclaim it in shell-setup.

2. python/wprs/plymouth/zfs sourced ../lib/logging.sh, but apps/ modules need
   ../../lib — so they aborted with "No such file or directory". Corrected.

3. Flatpak app modules ran `flatpak install -y` at system scope, which needs the
   Flatpak SystemHelper D-Bus service + polkit (unavailable in a chroot/TTY
   install) — the "The name is not activatable" failures (wireshark, xournal,
   rnote, firefox-browser, …). Switch ensure_flatpak and all 19 main-flow
   installs to --user scope, matching apply_flatpak_theme's --user overrides.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
 		2026-06-26 18:27:04 +02:00
..
anti-malware.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
ardour.sh fix(installer): root-owned ~/.config, wrong logging path, flatpak system scope 2026-06-26 18:27:04 +02:00
audacity.sh fix(installer): root-owned ~/.config, wrong logging path, flatpak system scope 2026-06-26 18:27:04 +02:00
blender-povray.sh fix(installer): root-owned ~/.config, wrong logging path, flatpak system scope 2026-06-26 18:27:04 +02:00
butter.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
caldav-sync.sh fix(installer): repair broken package lists and make user-timer setup non-fatal 2026-06-26 18:20:21 +02:00
cecilia.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
chromium.sh fix(installer): root-owned ~/.config, wrong logging path, flatpak system scope 2026-06-26 18:27:04 +02:00
claude.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
cockpit.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
codeblocks.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
croc.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
db-clients.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
disk-recovery.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
docker.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
doom.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
ffmpeg.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
firefox-browser.sh fix(installer): root-owned ~/.config, wrong logging path, flatpak system scope 2026-06-26 18:27:04 +02:00
freeipa-client.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
freeipa-server.sh feat(installer): add structured logging to all modules and installers 2026-05-22 01:44:31 +02:00
geany.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
gimp.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
gnuplot.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
himalaya.sh fix(installer): repair broken package lists and make user-timer setup non-fatal 2026-06-26 18:20:21 +02:00
imagemagick.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
inkscape.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
k8s.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
kate.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
kdenlive.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
krita.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
lamco-rdp-server.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
librewolf.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
llama-cpp.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
lmms.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
localsend.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
localtunnel.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
mail-notmuch.sh fix(installer): repair broken package lists and make user-timer setup non-fatal 2026-06-26 18:20:21 +02:00
min-browser.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
mixxx.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
mysql.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
networking-cli.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
nyxt.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
obsidian.sh fix(installer): root-owned ~/.config, wrong logging path, flatpak system scope 2026-06-26 18:27:04 +02:00
ollama.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
onlyoffice.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
open-webui.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
openarena.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
opendeck.sh fix(installer): install OpenDeck from AUR instead of Flatpak 2026-06-26 16:04:13 +02:00
openshot.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
plymouth-custom.sh feat(plymouth): add custom-logo variant, sync answerfile + docs 2026-06-26 10:57:32 +02:00
plymouth.sh fix(installer): root-owned ~/.config, wrong logging path, flatpak system scope 2026-06-26 18:27:04 +02:00
podman.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
prism.sh fix(installer): root-owned ~/.config, wrong logging path, flatpak system scope 2026-06-26 18:27:04 +02:00
productivity.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
python.sh fix(installer): root-owned ~/.config, wrong logging path, flatpak system scope 2026-06-26 18:27:04 +02:00
qemu.sh chore: add inline comments across all modules and configs 2026-06-25 13:07:06 +02:00
rdp-client.sh fix(installer): root-owned ~/.config, wrong logging path, flatpak system scope 2026-06-26 18:27:04 +02:00
rnote.sh fix(installer): root-owned ~/.config, wrong logging path, flatpak system scope 2026-06-26 18:27:04 +02:00
sauerbraten.sh feat(installer): add structured logging to all modules and installers 2026-05-22 01:44:31 +02:00
shotcut.sh fix(installer): root-owned ~/.config, wrong logging path, flatpak system scope 2026-06-26 18:27:04 +02:00
sox.sh feat(installer): add structured logging to all modules and installers 2026-05-22 01:44:31 +02:00
spotify.sh feat(installer): add structured logging to all modules and installers 2026-05-22 01:44:31 +02:00
ssh-server.sh feat(installer): add structured logging to all modules and installers 2026-05-22 01:44:31 +02:00
steam.sh fix(installer): root-owned ~/.config, wrong logging path, flatpak system scope 2026-06-26 18:27:04 +02:00
stuntrally.sh fix(installer): root-owned ~/.config, wrong logging path, flatpak system scope 2026-06-26 18:27:04 +02:00
tangent-notes.sh fix(installer): root-owned ~/.config, wrong logging path, flatpak system scope 2026-06-26 18:27:04 +02:00
tetris.sh feat(installer): add structured logging to all modules and installers 2026-05-22 01:44:31 +02:00
timeshift.sh feat(installer): add structured logging to all modules and installers 2026-05-22 01:44:31 +02:00
tlp.sh feat(installer): add structured logging to all modules and installers 2026-05-22 01:44:31 +02:00
toot.sh feat(installer): add structured logging to all modules and installers 2026-05-22 01:44:31 +02:00
vesktop.sh fix(installer): root-owned ~/.config, wrong logging path, flatpak system scope 2026-06-26 18:27:04 +02:00
vintagestory.sh feat(installer): add structured logging to all modules and installers 2026-05-22 01:44:31 +02:00
vscodium.sh fix(installer): root-owned ~/.config, wrong logging path, flatpak system scope 2026-06-26 18:27:04 +02:00
wireshark.sh fix(installer): root-owned ~/.config, wrong logging path, flatpak system scope 2026-06-26 18:27:04 +02:00
wprs.sh fix(installer): root-owned ~/.config, wrong logging path, flatpak system scope 2026-06-26 18:27:04 +02:00
xournal.sh fix(installer): root-owned ~/.config, wrong logging path, flatpak system scope 2026-06-26 18:27:04 +02:00
yt-dlp.sh feat(installer): add structured logging to all modules and installers 2026-05-22 01:44:31 +02:00
zed-ide.sh fix(installer): root-owned ~/.config, wrong logging path, flatpak system scope 2026-06-26 18:27:04 +02:00
zen-browser.sh fix(installer): root-owned ~/.config, wrong logging path, flatpak system scope 2026-06-26 18:27:04 +02:00
zfs.sh fix(installer): root-owned ~/.config, wrong logging path, flatpak system scope 2026-06-26 18:27:04 +02:00